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Overview

Why Nipoppy?
- The principles
- The use cases
Installation
Quickstart

Tutorials

Run MRIQC on a BIDS dataset
Integrations
- DataLad
Video series
- What is?
- How to?

Explanations

Study specification
The manifest file

How-to guides

User guide (legacy)
Initializing a new dataset
- Starting with non-BIDS data
- Starting with BIDS data
Creating the manifest file
Reorganizing imaging sourcedata
Organizing tabular data
Installing a pipeline
Running a pipeline
Tracking pipeline statuses
Parallelizing pipeline runs
- HPC job scheduling
- Local parallelization
Developing a Nipoppy pipeline

Reference

Command-line interface
Python API
- nipoppy
File schemas

Other

What’s new
Team
Contributing
Glossary

nipoppy.exceptions.ExecutionError¶

exception nipoppy.exceptions.ExecutionError(message='')¶

Exception for pipeline execution errors.

Parameters:: message (str)

code¶

nipoppy.exceptions.FileOperationError

nipoppy.exceptions.ContainerError

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